plasma_2.5.0 installation on Cray XE6 - xlintstc problem

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plasma_2.5.0 installation on Cray XE6 - xlintstc problem

Postby ElenaB » Tue Feb 12, 2013 11:35 am

Hello,

I want to install PLASMA version 2.5.0 on a Cray XE6.
Operating system: CLE: 4.0.UP03

I run
./setup.py --prefix=$HOME --blaslib=-"L$CRAY_LIBSCI_PREFIX_DIR/lib -lsci_cray_mp" --downcblas --downlapc --cc cc --fc ftn

It installs PLASMA and most tests are 'PASSED', except for these 2 :

sh: line 1: 21744 Segmentation fault (core dumped) xlintstc < ctest.in
sh: line 1: 21747 Segmentation fault xlintstz < ztest.in

A core is produced and when I use the gdb debugger on it:

gdb ./xlintstc core
...
Program terminated with signal 11, Segmentation fault.

#0 0x00000000009cc08d in tcmalloc::CentralFreeList::RemoveRange(void**,
void**, int) ()


Then using backtrace:

#0 0x00000000009cc08d in tcmalloc::CentralFreeList::RemoveRange(void**, void**, int) ()
#1 0x00000000009d04fb in tcmalloc::ThreadCache::FetchFromCentralCache(unsigned long, unsigned long) ()
#2 0x00000000009c5f1a in (anonymous namespace)::do_memalign(unsigned long, unsigned long) ()
#3 0x0000000000a494f1 in tc_posix_memalign ()
warning: Range for type (null) has invalid bounds 0..-121
...
#4 0x00000000005c639c in quark_malloc$$CFE_id_72c6b376_808455b3 (size=<optimized out>) at quark.c:415
#5 0x00000000005c8775 in quark_check_and_queue_ready_task$$CFE_id_72c6b376_808455b3 (quark=<optimized out>,
task=<optimized out>, worker_rank=<optimized out>) at quark.c:1511
#6 0x00000000005c9d92 in quark_address_set_node_initial_check_and_launch$$CFE_id_72c6b376_808455b3 (
quark=<optimized out>, address_set_node=<optimized out>, completed_dep=<optimized out>, worker_rank=<optimized out>)
at quark.c:2375
#7 0x00000000005ca063 in quark_remove_completed_task_and_check_for_ready$$CFE_id_72c6b376_808455b3 (
quark=<optimized out>, task=<optimized out>, worker_rank=<optimized out>) at quark.c:2454
#8 0x00000000005c9ba8 in quark_process_completed_tasks$$CFE_id_72c6b376_808455b3 (quark=<optimized out>)
at quark.c:2328
#9 0x00000000005c758a in QUARK_Barrier (quark=<optimized out>) at quark.c:916
#10 0x00000000005c76ae in QUARK_Waitall (quark=<optimized out>) at quark.c:959
#11 0x00000000004eed09 in PLASMA_cungqr (M=<optimized out>, N=<optimized out>, K=<optimized out>, A=<optimized out>,
LDA=<optimized out>, descT=<optimized out>, Q=<optimized out>, LDQ=<optimized out>) at cungqr.c:138
#12 0x00000000004b308b in plasma_cungqr_ (M=<optimized out>, N=<optimized out>, K=<optimized out>, A=<optimized out>,
LDA=<optimized out>, descT=<optimized out>, B=<optimized out>, LDB=<optimized out>, info=<optimized out>)
at plasma_cf77.c:434
#13 0x000000000046c3b0 in cqrt03 (m=<optimized out>, n=<optimized out>, k=<optimized out>, af=<optimized out>,
c=<optimized out>, cc=<optimized out>, q=<optimized out>, lda=<optimized out>, t=<optimized out>,
work=<optimized out>, lwork=<optimized out>, rwork=<optimized out>, result=<optimized out>) at cqrt03.f:130
#14 0x0000000000467c38 in cchkqr (dotype=<optimized out>, nm=<optimized out>, mval=<optimized out>, nn=<optimized out>,
nval=<optimized out>, nnb=<optimized out>, nbval=<optimized out>, nxval=<optimized out>, ibval=<optimized out>,
nrhs=<optimized out>, thresh=<optimized out>, tsterr=<optimized out>, nmax=<optimized out>, a=<optimized out>,
af=<optimized out>, aq=<optimized out>, ar=<optimized out>, ac=<optimized out>, b=<optimized out>,
x=<optimized out>, xact=<optimized out>, tau=<optimized out>, work=<optimized out>, rwork=<optimized out>,
iwork=<optimized out>, nout=<optimized out>) at cchkqr.f:299
warning: Range for type (null) has invalid bounds 1..-72
warning: Range for type (null) has invalid bounds 1..-72
warning: Range for type (null) has invalid bounds 1..-72
warning: Range for type (null) has invalid bounds 1..-72
warning: Range for type (null) has invalid bounds 1..-128
warning: Range for type (null) has invalid bounds 1..-128
warning: Range for type (null) has invalid bounds 1..-128
warning: Range for type (null) has invalid bounds 1..-128
warning: Range for type (null) has invalid bounds 1..-88
warning: Range for type (null) has invalid bounds 1..-112
warning: Range for type (null) has invalid bounds 1..-48
warning: Range for type (null) has invalid bounds 1..-24
warning: Range for type (null) has invalid bounds 1..-24
warning: Range for type (null) has invalid bounds 1..-126
#15 0x0000000000447ae7 in CCHKAA () at cchkaa.f:513
#16 0x00000000009e1114 in __libc_start_main (main=0x443ce0 <CCHKAA>, argc=1, ubp_av=0x7fffffffb298, init=0,
fini=0x7fffffffada0, rtld_fini=0x7fffffffada0, stack_end=0x7fffffffb288) at libc-start.c:226
#17 0x0000000000408091 in _start () at ../sysdeps/x86_64/elf/start.S:113

Elena
ElenaB
 
Posts: 3
Joined: Tue Feb 05, 2013 5:29 am

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