Heike Jagode

 
 

Heike Jagode is a Research Assistant Professor in the Innovative Computing Laboratory (ICL), Tickle College of Engineering, at the University of Tennessee - Knoxville (UTK). She specializes in High Performance Computing (HPC) and the efficient use of advanced computer architectures; focusing primarily on developing methods and tools for performance analysis and tuning of parallel scientific applications.

Heike's Ph.D. research focused on a multi-disciplinary effort to develop Dataflow Programming Paradigms for Computational Chemistry Methods to make these methods compatible with next-generation task scheduling systems like PaRSEC. In her research, she converted the state-of-the-art NWChem Coupled Cluster methods into different dataflow versions and demonstrated the benefits of dataflow-based task execution over coarse grain parallelism in terms scalability, resource utilization, and programmability.

Education:
Doctor of Philosophy (Ph.D.) in Computer Science, University of Tennessee, Knoxville, USA
Master of Science (M.Sc.) in High Performance Computing, University of Edinburgh, EPCC, Scotland, UK
Master of Science (M.Sc.) in Applied Techno-Mathematics, University of Applied Sciences Mittweida, Germany
Bachelor of Science (B.Sc.) in Applied Mathematics, University of Applied Sciences Mittweida, Germany



CoDAASH: A Co-Design Approach for Advances in Software and Hardware
ECP: Exascale Computing Project: Exa-PAPI: The Exascale Performance Application Programming Interface
PAPI: The Performance API
PULSE: PAPI Unifying Layer for Software-defined Events
POINT: Productivity from Open, INtegrated Tools
SuPER: Institute for Sustained Performance, Energy, and Resilience


2017

Book Chapter: Parker, S., Mellor-Crummey, J., Ahn, D., Jagode, H., Brunst, H., Shende, S., Malony, A., Lecomber, D., DelSignore, J., Tschueter, R., Castain, R., Harms, K., Carns, P., Loy, R., Kumaran, K. "Performance Analysis and Debugging Tools at Scale (to be published)" in Exascale Scientific Applications: Scalability and Performance Portability, Chapman & Hall / CRC Press, Computational Science Series, pp. 17-50, 2017.

Best Research Poster Finalist: Danalis, A., Jagode, H., Weaver, V., Liu, Y., Dongarra, J. "New Developments for PAPI 5.6+," Supercomputing 2017: The International Conference for High Performance Computing, Networking, Storage and Analysis (SC17), Denver, Colorado, USA, November 12-17, 2017.

Best Research Paper Finalist: Haidar, A., Jagode, H., YarKhan, A., Vaccaro, P., Tomov, S., Dongarra, J. "Power-aware Computing: Measurement, Control, and Performance Analysis for Intel Xeon Phi," 2017 IEEE High Performance Extreme Computing Conference (HPEC '17), Waltham, Massachusetts, USA, September 12-14, 2017.

Ph.D. Dissertation: Jagode, H., "Dataflow Programming Paradigms for Computational Chemistry Methods," PhD dissertation, University of Tennessee, Knoxville, USA, May 2017. [pdf][bibtex]

2016

Journal: Jagode, H., Danalis, A., Dongarra, J. "Accelerating NWChem Coupled Cluster through dataflow-based Execution," International Journal of High Performance Computing Applications (IJHPCA), pp. 1-13, Jan. 2017. [pdf][bibtex]

2015

Book Chapter: Jagode, H., YarKhan, A., Danalis, A., Dongarra, J. "Power Management and Event Verification in PAPI," Tools for High Performance Computing 2015, 9th International Workshop on Parallel Tools for High Performance Computing, September 2015, Dresden, Germany, Springer International Publishing, Andreas Knuepfer et al. (Eds.), pp. 41-51, 2016. [pdf][bibtex]

Jagode, H., Danalis, A., Bosilca G., Dongarra, J. "Accelerating NWChem Coupled Cluster through dataflow-based Execution," Parallel Processing and Applied Mathematics: 11th International Conference, PPAM 2015, Krakow, Poland, September 6-9, 2015, Springer International Publishing, R. Wyrzykowski et al. (Eds.): PPAM 2015, Part I, LNCS 9573, pp. 366-376, 2016. [pdf][bibtex]

Danalis, A., Jagode, H., Bosilca G., Dongarra, J. "PaRSEC in Practice: Optimizing a legacy Chemistry application through distributed task-based execution," 2015 IEEE International Conference on Cluster Computing, Chicago, Illinois, USA, IEEE, pp. 304-313, September 8-11, 2015. [pdf][bibtex]

2014

McCraw, H., Ralph, J., Danalis, A., Dongarra, J. "Power Monitoring with PAPI for Extreme Scale Architectures and Dataflow-based Programming Models," Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications (HPCMASPA 2014), IEEE Cluster 2014, Madrid, Spain, September 26, 2014, IEEE, pp. 385-391. [pdf][bibtex]

McCraw, H., Danalis, A., Herault, T., Bosilca G., Dongarra, J., Kowalski, K., Windus, T.L. "Utilizing Dataflow-based Execution for Coupled Cluster Methods," IEEE Cluster 2014, Madrid, Spain, September 22-26, 2014, IEEE, pp. 296-297. [pdf][bibtex]

2013

McCraw, H., Terpstra, D., Dongarra, J., Davis, K., Musselman R. "Beyond the CPU: Hardware Performance Counter Monitoring on Blue Gene/Q," International Supercomputing Conference 2013 (ISC'13), Leipzig, Germany, June 16-20, 2013, J.M. Kunkel, T. Ludwig, and H. Meuer (Eds.): Supercomputing, LNCS 7905, pp. 213-225. Springer, Heidelberg (2013). [pdf][bibtex]

Weaver, V., Terpstra, D., McCraw, H., Johnson, M., Kasichayanula, K., Ralph, J., Nelson, J., Mucci, P., Mohan, T., Moore, S. "PAPI 5: Measuring Power, Energy, and the Cloud," 2013 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS-2013), Austin, TX, April 21-23, 2013. [pdf][bibtex]

2012

Johnson, M., McCraw, H., Moore, S., Mucci, P., Nelson, J., Terpstra, D., Weaver, V., Mohan, T. "PAPI-V: Performance Monitoring for Virtual Machines," CloudTech-HPC 2012, Pittsburgh, PA, September 10-13, 2012. [pdf][bibtex]

Full Day Tutorial at XSEDE12: Hadri, B., Jagode, H., Moore, S., Patel P., You, H. "Toward Improved Performance Solutions (TIPS) on XSEDE Systems," XSEDE12 (Extreme Science and Engineering Discovery Environment), Chicago, IL, July 16-19, 2012. [http][bibtex]

Jagode, H., Moore, S., Terpstra, D."Performance Counter Monitoring for the Blue Gene/Q Architecture," ScicomP 2012, Toronto, Canada, 2012. [pdf][bibtex]

McCraw, H. "Performance Counter Monitoring for the Blue Gene/Q Architecture," University of Tennessee Computer Science Technical Report, ICL-UT-12-01, June 6, 2012. [pdf][bibtex]

2011

Malony, A., Biersdorff, S., Shende, S., Jagode, H., Tomov, S., Juckeland, G., Dietrich, R., Poole, D., Lamb, C. "Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs," ICPP 2011, Taipei, Taiwan, 2011. [pdf][bibtex]

2010

Journal: Jagode, H., Knuepfer, A., Dongarra, J., Jurenz, M., Mueller, M. S., Nagel, W. E. "Trace-based Performance Analysis for the Petascale Simulation Code FLASH," International Journal of High Performance Computing Applications (IJHPCA), Volume 25 Issue 4 November 2011 pp. 428 - 439, 2010. [Original Journal version (black/white pdf)] [Color version of pdf] [bibtex]

2009

Book Chapter: Terpstra, D., Jagode, H., You, H., Dongarra, J. "Collecting Performance Data with PAPI-C," Tools for High Performance Computing 2009, Springer Berlin / Heidelberg, 3rd Parallel Tools Workshop, Dresden, Germany, pp. 157-173, 2009. [pdf][bibtex]

Alam, S. R., Barrett, R. F., Jagode, H., Kuehn, J. A., Poole, S. W. and Sankaran, R. "Impact of Quad-core Cray XT4 System and Software Stack on Scientific Computation," Euro-Par 2009, Lecture Notes in Computer Science, Springer Berlin / Heidelberg, Delft, The Netherlands, Volume 5704/2009, pp. 334-344, August 25-28, 2009. [pdf][bibtex]

ISC'09 Research Award: Jagode, H., Moore S., Terpstra, D., Dongarra, J., Knuepfer, A., Jurenz, M., Mueller, M. S., Nagel, W. E. "I/O Performance Analysis for the Petascale Simulation Code FLASH," ISC'09, Hamburg, Germany, June 23 - 26, 2009. [pdf][bibtex]

de Supinski, B., Alam, S., Bailey, D., Carrington, L., Daley, C., Dubey, A., Gamblin, T., Gunter, D., Hovland, P., Jagode, H., Karavanic, K., Marin, G., Mellor-Crummey, J., Moore, S., Norris, B., Oliker, L., Olschanowsky, C., Roth, P., Schulz, M., Shende, S., Snavely, A. "Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team," SciDAC 2009, Journal of Physics: Conference Series, IOP Publishing, San Diego, California, Vol. 180 (2009) 012039, June 14-18, 2009. [pdf][bibtex]

Jagode, H., Dongarra, J., Alam, S., Vetter, J., Spear, W., Malony, A. "A Holistic Approach for Performance Measurement and Analysis for Petascale Applications," ICCS 2009 Joint Workshop: Tools for Program Development and Analysis in Computational Science and Software Engineering for Large-Scale Computing, G. Allen et al. eds. Springer-Verlag Berlin Heidelberg 2009, Baton Rouge, Louisiana, ICCS 2009, Part II, LNCS 5545, pp. 686-695, May 25-27, 2009. [pdf][bibtex]

Jagode, H., Knuepfer, A., Dongarra, J., Jurenz, M., Mueller, M. S., Nagel, W. E. "Trace-based Performance Analysis for the Petascale Simulation Code FLASH," Innovative Computing Laboratory Technical Report, ICL-UT-09-01, April 15, 2009. [pdf][bibtex]

2008

Jagode, H., Hein, J. "Custom assignment of MPI ranks for parallel multi-dimensional FFTs: Evaluation of BG/P versus BG/L," Proceedings of the 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA-08), IEEE Computer Society, Sydney, Australia, pp.271-283, 2008. [pdf][bibtex]

Jagode, H., Hein, J., Trew, A. "Task placement of parallel multi-dimensional FFTs on a mesh communication network," University of Tennessee Computer Science Technical Report, UT-CS-08-613, April 22, 2008. [pdf][bibtex]


M.Sc. Thesis: Jagode, H., "Fourier Transforms for the Blue Gene/L Communication Network," MSc thesis, The University of Edinburgh, Scotland, UK, 2006. [pdf][bibtex]

M.Sc. Thesis: Jagode, H., "Calculation of Heat Conduction for a Building Simulation," MSc thesis, University of Applied Sciences Mittweida, Germany (Advisor: Prof. Cordula Bernert); Institute for Air-Conditioning and Refrigeration Technology, Dresden (ILK), 2001.



ISC HPC 2018 (International Supercomputing 2018) - Technical Program Committee: Workshops
24-28 June, 2018, Frankfurt, Germany


SC17 (Supercomputing 2017) - Technical Program Committee: Tutorials
12-17 November, 2017, Denver, Colorado


ESPT2017: 6th Workshop on Extreme-Scale Programming Tools
In conjunction with SC17 - Program Committee

12 November, 2017, Denver, Colorado


ICCS 2017 (2017 International Conference on Computational Science) - Program Committee
12-14 June, 2017, Zuerich, Switzerland


SC16 (Supercomputing 2016) - Technical Program Committees: (1) Technical Papers, (2) Tutorials
13-18 November, 2016, Salt Lake City, Utah


ESPT2015: Workshop on Extreme-Scale Programming Tools
In conjunction with SC15 - Program Committee

16 November, 2015, Austin, Texas


2. International Workshop on Hardware-Software Co-Design for High Performance Computing (Co-HPC 2015)
In conjunction with SC15 - Program Committee

16 November, 2015, Austin, Texas


1. International Workshop on Hardware-Software Co-Design for High Performance Computing (Co-HPC 2014)
In conjunction with SC14 - Program Committee

17 November, 2014, New Orleans, Louisiana


SC14 (Supercomputing 2014) - Technical Posters Committee
16-21 November, 2014, New Orleans, Louisiana


SC13 (Supercomputing 2013) - Technical Posters Committee
17-22 November, 2013, Denver, Colorado


SC12 (Supercomputing 2012) - Technical Posters Committee
10-16 November, 2012, Salt Lake City, Utah


PSTI 2011 (Workshop on Parallel Software Tools and Tool Infrastructures) - Program Committee
13-16 September, 2011, Taipei, Taiwan


ISC'11 (International Supercomputing 2011)
19-23 June, 2011, Hamburg, Germany


PSTI 2010 (Workshop on Parallel Software Tools and Tool Infrastructures) - Program Committee
13-16 September, 2010, San Diego, CA


ISC'10 (International Supercomputing 2010)
30 May - 3 June, 2010, Hamburg, Germany


SC08 (Supercomputing 2008) - European Media Relations Coordinator
15-21 November, 2008, Austin, TX


Euro-Par 2006 (European Conference on Parallel Computing)
29 Aug - 1 Sep, 2006, Dresden, Germany


ECMTB 2005 (The European Conference on Mathematical and Theoretical Biology)
18-22 July, 2005, Dresden, Germany


ParCo 2003 (Parallel Computing Conference)
2-5 September, 2003, Dresden, Germany




jagode@icl.utk.edu
Phone 865-974-8057
Office Claxton 313

University of Tennessee
Innovative Computing Laboratory
1122 Volunteer Blvd, Claxton Building
Knoxville, Tennessee 37996-3450
Fax 865-974-8296